Use cases¶

Here, we will showcase several maps generated using the PhyloNext pipeline for different use cases.

Phylogenetic diversity of terrestrial Mammals based on the IUCN datasets¶

Phylogenetic diversity
Global_PD

Centers of endemism based on the CANAPE analysis
Global_CANAPE

Data sources:

The IUCN Red List of Threatened Species
https://www.iucnredlist.org/resources/spatial-data-download
Phylogenetic tree
Gumbs R, Gray CL, Böhm M, Burfield IJ, Couchman OR, Faith DP, Forest F, Hoffmann M, Isaac NJB, Jetz W, Mace GM, Mooers AO, Safi K, Scott O, Steel M, Tucker CM, Pearse WD, Owen NR, Rosindell J (2023) The EDGE2 protocol: Advancing the prioritisation of Evolutionarily Distinct and Globally Endangered species for practical conservation action. PLOS Biology, 21(2), e3001991. DOI:10.1371/journal.pbio.3001991
Upham NS, Esselstyn JA, Jetz W (2019) Inferring the mammal tree: Species-level sets of phylogenies for questions in ecology, evolution, and conservation. PLoS Biology, 17(12), e3000494. DOI:10.1371/journal.pbio.3000494